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Request to attend the May 2011
Molecular Dynamics Workshop Series

 Workshop Series Description

Workshop series will be held in the Doll Conference Room in the Gunn (SIEPR) Building:

  • Developing Molecular Dynamics (MD) on GPUs with OpenMM (Day 1) -- May 23, 2011 from 9:30am to 5:00pm
  • Introduction to Molecular Dynamics (MD) and Trajectory Analysis with Markov State Models (Day 2) -- May 24, 2011 from 9:30am to 5:00pm

Registration is free but spaces are limited. We will confirm your registration.

For questions, please send e-mail to simbiosfeedback@stanford.edu.



Name(Last, First): E-mail:

University/Company:

School/Department:

Lab (if applicable):

Why do you want to attend the workshop? Briefly describe your background. State any specific research goals you hope to accomplish with the tools and information from the workshop.

I want to register for: (mark all that apply)
Developing Molecular Dynamics on GPUs with OpenMM (Mon, 5/23)
Introduction to MD and Trajectory Analysis with MSMBuilder (Tu, 5/24)

How long have you been using molecular dynamics?
< 1 month
1 to 12 months
> 1 year

Indicate the molecular dynamics packages with which you are proficient (mark all that apply):
AMBER
CHARMM
Desmond
GROMACS
 NAMD
TINKER
None
Other (Specify)
Indicate the top two topics you would like to learn about at the workshop (max: 2 choices):
Designing custom forces with OpenMM
OpenMM's Python API
AMOEBA polarizable force fields
Example of OpenMM integration into existing MD code
 Testing and validation of OpenMM
How to get started using MD simulations
Using OpenMM with AMBER/SANDER input files
Other (Specify)

The laptop I plan to bring to the workshop runs:
Windows XP
Windows Vista
Windows 7
Intel-based Mac OS, Specify version number:
Power-PC Mac OS, Specify version number:
Linux, Specify:
Other, Specify:

Indicate if the laptop you will use at the workshop has a supported GPU card.

  1. Locate the type of GPU card in your laptop
    • Windows 7: Start -> Control Panel -> System and Security -> System -> Device Manager -> Display adapters
    • Windows XP: Start -> Control Panel -> System -> Hardware -> Device Manager -> Display adapters
    • Mac: Apple -> About this Mac -> More info -> Graphics/Displays
  2. Determine if your laptop's GPU card is on the list of supported GPU cards:

My laptop has a:
Supported NVIDIA GPU card, Specify:
Supported ATI GPU card, Specify:
Non-supported GPU card
I don't know

Day 1 Participants - Please indicate your C++ experience:
None
Beginner
Intermediate
Proficient

Day 2 Participants - Please indicate your Python experience:
None
Beginner
Intermediate
Proficient