Dissemination of Research Results
The potential user community for the software produced by Simbios, and available from Simtk.org is very large. Our initial set of Driving Biological Problems (DBP) demonstrates the breadth of problems for which physics-based modeling and simulation are critical. The RNA folding DBP includes RNA biologists, physical chemists, physicists, molecular biologists, and biochemists. The myosin dynamics DBP includes biochemists, biomechanical engineers, geneticists, chemists, biophysicists, and structural biologists. The neuromuscular dynamics DBP includes orthopedic surgeons, biomechanical engineers, neurologists, and physical therapists. The cardiovascular fluid dynamics DBP includes vascular surgeons, cardiologists, vascular biologists, and bioengineers. We are convinced that these users will provide appropriate "pull" on SimTK to ensure that it has relevant and useful capabilities. Please visit http://simtk.org to view our progress on SimTK.
Our dissemination plan uses both traditional and novel channels to ensure that the fruits of our efforts are properly disseminated to the scientific, engineering and lay community.
Biomedical Computation Review
As part of the dissemination effort of Simbios we publish a new quarterly magazine, Biomedical Computation Review. The purpose of this magazine is to disseminate new discoveries and resources to the biomedical community. While the scope of Simbios is on physics-based simulation of biological structures, we are covering the broader area of biomedical computation with the Biomedical Computation Review, with a focus on cross cutting issues that are important to and give identity to this entire community. Although originally envisioned as a newsletter, we have taken the initiative to turn our new publication into a full magazine (quarterly, in print and online, both free of charge).
Please visit Biomedical Computation Review to view and download past and present issues, or to request a free subscription.
Training Biocomputational Scientists
Stanford has a strong track record in training graduate students and post-doctoral fellows. We have access to training grant support and training programs across all the disciplines contributing to this Center. Stanford has a tradition of equipping biomedical computation students and post-doctoral fellows with a broad set of tools, so that they are prepared to approach unanticipated research challenges that may arise in the future. The main focus of our proposal in training, therefore, is to fully participate in and augment our existing programs with courses that are specifically geared towards the intellectual domain of physics-based simulation. Thus, we will partner with the new Department of towards students and post-doctoral fellows in the computational sciences. These courses will strengthen existing training programs in Bioengineering, Biomedical Informatics, Computer Science, Electrical Engineering, Biomechanical Engineering, and Structural Biology from which students on this project will be drawn. In the context of existing courses, seminars, and community building activities, we will be well positioned to continue being a leader in the general education of biomedical computation scientists.