Simbios
 
Science Talks for Year 4
         
Date
Time/Loc
Speaker
Title
Video
07/24/08 4:00pm, S362

Andres Kriete, Drexel University

Robustness and Capacities of the Human Respiratory System assessed by Multiscale Modeling
Abstract
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07/16/08 10:00am, S222 Petr Jordan, Harvard Biorobotics Laboratory Image-Based Mechanical Characterization of Soft Tissue using Three-Dimensional Ultrasound Imaging
Abstract
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05/28/08 4:00pm, S360

Michael Levitt
Stanford University

Mesoscale Modeling of Macromolecular Machines
Abstract
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05/21/08 4:00pm, S360

Gunnar Schroeder
Stanford University

Structure Refinement at Low Resolution
Abstract
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05/14/08 4:00pm, S360

Xuhui Huang
Stanford University

Computational Studies to Elucidate the Fundamental Mechanism of RNA Transcription
Abstract
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05/07/08 4:00pm, S360

David Parker
Stanford University
and

Modeling the Myosin V Dimer: Two Heads Are Better Than One View Video
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Sivaraj Sivaramakrishnan
Stanford University

Understanding the Stability and Flexibility of the Unusually
Long Single Alpha-Helical Tail Domain of Myosin VI using Molecular
Dynamics Simulations
Abstract

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04/30/08 4:00pm, S360

Ronald Young Kwon
Stanford University

Towards Image-Based Mechanical Models of Cells
Abstract
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04/23/08 4:00pm, S360

Ellen Kuhl
Stanford University

SimGrowth - A virtual lab for myocardial infarction
Abstract
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04/16/08 4:00pm, S360

Michael Wall
Los Alamos National Laboratory

Computational Insights into Allostery, with Bioinformatics Applications
Abstract
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04/02/08 4:00pm, S360

Alberto Figueroa
Stanford University

MULTI-SCALE MODELING OF BLOOD VESSELS USING A FLUID-SOLID GROWTH FRAMEWORK
Abstract
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03/26/08 SPRING BREAK

SPRING BREAK

SPRING BREAK  
03/20/08 - 03/21/08 8am - 5pm, S363

Michael Sherman
Stanford University

SimTK Core Workshop Workshop Slides and Videos
Unrestricted Access
03/05/08 4:00pm, S360

Markus Böl
Institute of Solid Mechanics

Micro-Macro Modelling: From Sarcomere to Muscles Contraction
Abstract
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02/27/08 4:00pm, S360 Leo Guibas
Stanford University
Packings, Witnesses, and Repeated Geometric Structures
Abstract
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02/20/08 4:00pm, S360 Patrice Koehl
UC Davis
Understanding Electrostatics: Beyond the Poisson-Boltzmann view
Abstract
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02/06/08 4:00pm, S360 Samuel Flores
Stanford University
As coarse as it gets: RNA dynamics in six degrees of freedom
Abstract
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01/30/08 4:00pm, S360 Vijay Pande
Stanford University
Some suggestions for future Simbios directions for molecular simulation View Video
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01/23/08 4:00pm, S360 Alain Laederach
Stanford University
High-throughput single-nucleotide structural mapping by CAFA (Capillary Automated Footprinting Analysis)
Abstract
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01/16/08 4:00pm, S360 Jung-Chi Liao, Jeff Reinbolt, Jeanette Schmidt & Scott Delp
Stanford University
PSB Highlights from session on Physics-Based Simulation and Multiscale Modeling
Abstract
 
12/05/07 4:00pm, S361 Dariya Glazer
Stanford University
Improving Protein Function Prediction with Molecular Dynamics Simulations
Abstract
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11/28/07 4:00pm, S360 Adrian Lew
Stanford University
Some new ideas for the simulation of the mechanics of soft tissues with applications to blood vessel micromechanics View Video
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11/20/07 1:00pm, S361 Jay Humphrey
Texas A&M University
Vascular Adaptation and Mechanical Homeostasis Across Scales
Abstract
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11/14/07 4:00pm, S361 Jean-Claude Latombe
Stanford University
Computational Tools to Study Protein Flexibility
Abstract
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11/07/07 4:00pm, S361 Ajay Seth
Stanford University
Biologically inspired joints using Simbody
Abstract
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10/31/07 4:00pm, S360 Jung-Chi Liao
Stanford University
Integrating computational analysis and protein engineering to study myosin mechanics
Abstract
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10/25/07 8:00pm-5:00pm, Auditorium Symposium guest speakers Bio-X Symposium 2007
Life in Motion
http://simtk.org/home/lifeinmotion
 
10/17/07 4:00pm, S360 Russ Altman & Scott Delp
Stanford University
State of Simbios:  Accomplishments & Challenges
Abstract
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10/10/07 4:00pm, S361 Neelesh Patankar
Northwestern University
A fluctuating hydrodynamics based approach for Brownian dynamics
Abstract
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10/03/07 4:00pm, S361 Charles Taylor and Nathan Wilson
Stanford University
SIMVASCULAR - Image-based modeling of blood flow in Arteries
Abstract
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09/26/07 4:00pm, S360 Scott Delp
Stanford University
OpenSim 1.0: Software to Create and Analyze Dynamic Simulations of Movement
Abstract
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09/12/07 4:00pm, S361 Daniel Cook & John Gennari
University of Washington
Biosimulation model reuse and reproducibility: A multi-scale example
Abstract
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