Simbios
 
Science Talks for Year 3

Date
Time/Loc
Speaker
Title
Video
06/06/07 4:00pm, S360 Jesus Izaguirre, Stanford University Normal mode splitting of Langevin dynamics applied to biomolecules
Abstract

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06/01/07 9:00am, S360 Eric Westhof, Université Louis Pasteur, France
(Special Seminar)

Non-Watson-Crick Base Pairs, RNA Motifs & RNA Networks
Abstract

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05/23/07 4:00pm, S360 Ellen Kuhl, Stanford University Continuum biomechanics - pantha psiloni
Abstract

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05/16/07 4:00pm, S360 Gunnar Schroeder, Stanford University Conformational sampling under low resolution experimental restraints
Abstract
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05/09/07 4:00pm, S360 Tamar Shinar, Stanford University Hybrid Simulation of Deformable Solids
Abstract

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05/02/07 4:00pm, S360 Xuhui Huang, Stanford University Exploring free energy landscapes of RNA folding by all-atom simulations using Replica Exchange Sampling Method
Abstract

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04/25/07 4:00pm, S360 Peggy Yao, Stanford University Efficient Algorithms to Sample Closed Clash-Free Conformations of Protein Loops
Abstract
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04/20/07
4:00pm, Auditorium Jeff Peng, Notre Dame Understanding Motions Underlying Protein-Protein Binding via NMR
Abstract
 
04/18/07 4:00pm, S360 Eftychios Sifakis, Stanford University The Technological Legacy of Virtual Human Simulation
Abstract

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04/11/07 4:00pm, S360 Victoria Howle, Sandia National Laboratories

Preconditioners Based on Algebraic Commutators for Incompressible Navier-Stokes Equations
Abstract

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04/04/07 4:00pm, S360 Arthur Olson, The Scripps Research Institute Tangible Interfaces for Structural Molecular Biology
Abstract

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03/28/07 4:00pm, S360 Darryl Thelen, University of Wisconsin Simulation of Human Locomotion: Computational Techniques and Applications in Rehabilitation
Abstract

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03/21/07 4:00pm, S360 Alexey Onufriev, Virginia Tech Bio-molecular electrostatics for everyone: novel fast algorithms and web-based applications
Abstract

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03/14/07 4:00pm
S360
Andrew McCulloch, University of California San Diego

Cardiac Systems Biology and Multi-Scale Modeling
Abstract

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03/07/07 4:00pm
S360
Alex TenEyck, Stanford University Discontinuous Gelerkin for nonlinear elasticity with applications to the blood vessel
Abstract

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02/28/07 4:00pm
S360
Jill Higginson, University of Delaware Speed, asymmetry and muscle coordination during walking
Abstract

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02/21/07 4:00pm, S360 Peter Fritzson, Linkoping University, Sweden

High Level Mathematical Modeling and Simulation with Modelicausing OpenModelica on Biological and Medical Applications
Abstract 

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02/14/07 4:00pm, S360 Ronald Germain, National Institutes of Health
New Software for Complex Multiscale Spatially-resolved Modeling and Simulation: A Focus on the Biology, Not the Math
Abstract

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02/07/07 4:00pm, S360

Pengyu Ren,
Uiversity of Texas at Austin

Coarse-Grained Physical Model for RNA
Abstract

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01/31/07 4:00pm, S360 Jeffrey Reinbolt, Stanford University

Neuromuscular DBP Science: Investigating Stiff-Knee Gait
Abstract

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01/24/07 4:00pm S360 Samuel Flores, Yale Protein hinge motion prediction: Solving the problem of induced fit
Abstract

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01/17/07 4:00pm, S360 Patrice Koehl, UC Davis Geometry for Biomolecules
Abstract

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01/10/07 4:00pm, S360 Michael Sherman, Stanford University
SimTK Core toolkit (including Simbody): design, progress, and plans
Abstract

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12/13/06 4:00pm, S360 Adam Godzik, University of California San Diego Evolutionary flexibility in protein structures – what physics can learn from biology
Abstract

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12/06/06 4:00pm, S361 Vijay Pande, Stanford University New methods for long timescale dynamics
Abstract

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11/29/06 4:00pm, S360 Magda Jonikas Stanford University Coarse-grained modeling of RNA structure
Abstract

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11/15/06 4:00pm, S361

Leo Guibas,
Stanford University

Is There Some Geometry in Your Physics?
Abstract

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11/08/06 4:00pm, S360 Rudranarayan M Mukherjee, Rensselaer Polytechnic Institute, NY Multibody Dynamics Algorithms for Biomolecular Simulations
Abstract

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11/01/06 4:00pm, S360 Tony Sherbondy, Stanford University In vivo measurement of anisotropic tissue microstructure arrangement using most likely connections through diffusion imaging data
Abstract

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10/18/06 4:00pm, S360 Peter Kasson, Stanford University
Understanding membrane fusion via molecular
dynamics simulation
Abstract

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10/11/06 4:00pm, S360 Paul Mitiguy, Stanford University Training for Physics-based Simulation of Biological Structures
Abstract

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10/04/06 4:00pm, S361 Alberto Figueroa , Stanford University
The Coupled-Momentum Method for Fluid-Structure Interactions: Verification with Womersley Elastic Tube Theory and Applications to Large-Scale Subject Specific Models
Abstract

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09/27/06 4:00pm, S361 Russ Altman and Scott Delp, Stanford University Challenges and Future Directions for Simbios
Abstract

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9/13/06 4:15pm, S360 Anthony Nicholls,
OpenEye Scientific Software
20 years of wasted CPU time: A physicist's approximation of molecular modeling
Abstract

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8/21/06 3pm, S360 Warren DeLano
DeLano Scientific LLC
An Introduction to PyMOL: Visualization and Animation
Abstract